About EDF

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About EDF

Expression Data Format and EDF, which stands in the same format as the attempt to describe the same data, it was conceived under the policy, a common data input format Miyano Ken. Has the following features.

  1. knock down and deal with time course data.
  2. In addition, replicate data is also handled.
  3. Data associated with a measured expression data (score flag and so on. Called sub data) can be written.

For more information, EDF Start - please refer to.

Creating and editing EDF data

Creating EDF

Experimental data

When using Excel on the pipeline if you only use a text editor application, and time course - from EDF data were measured three times - explains how to create.

Case1: using text editor or Exel
EDF Start - the "measured data of EDF ① ~ ⑤" and "EDF of point" in reference to the slide

  • PrimaryKeyGroupID, PrimaryKeyGroupName
  • SecondaryKeyGroupID, SecondaryKeyGroupName (replicate and do not have to consider if you are set to 1 or all omitted.)
  • TypeID

Note, EDF experimental data are summarized in a single file.


Case2: using XiP

Re-measurement data in the form of a data frame, using the output of EDF pipeline application templates, and procedures as necessary to edit it.

  1. To each of the measurement data, written in the form of a data frame.

Image CreateEDFWithPipeline01.png

  1. In Paipurainapurikeshon, Detafuremufairu load, EDF performs file to create a flow into the output.

createEDF.xml

Image CreateEDFWithPipeline02.png

  • EDF was considering to create replicate data, Jdataframe Input and Convert JDataFrame to JEDF between the edge of the "Start Priority" parameter, replicate Please set the appropriate values in descending order from 1. In createEDF.xml
Input Data Replicate Start Priority
data1.tsv 1 3
data2.tsv 2 2
data3.tsv 3 1

Has become.

  • Convert JDataFrame to JEDF the "Use Header As" parameter, the EDF of the data frame header PrimaryKeyGroupName / SecondaryKeyGroupName are assigned to both sets.

3. Sub data (TypeID data expression is not) and put a, 2 EDF in the output file (template) to edit them if necessary. ★ (working) Edit JEDF if you can also edit the sub-data, Convert JDataFrame to JEDF Edit JEDF and Output JEDF between flow and inserted.

No experimental data

Case1: using text editor or Exel

EDF Start - in reference to

  • PrimaryKeyGroupID, PrimaryKeyGroupName
  • SecondaryKeyGroupID, SecondaryKeyGroupName (replicate and do not have to consider if you are set to 1 or all omitted.)
  • TypeID

Note, EDF creates the file.

Case2: using XiP

★ (working) Edit EDF is used.

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